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1

Of men and machines

Tramontano, Anna

Journal:

Natural Structural Biology

Year:

2003

Language:

english

File:

PDF, 88 KB

english, 2003

2

Antibody Modeling: Implications for Engineering and Design

Veronica Morea, Arthur M. Lesk, Anna Tramontano

Journal:

Year:

2000

Language:

english

File:

PDF, 184 KB

english, 2000

3

Critical assessment of methods of protein structure prediction (CASP) - round x

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 103 KB

english, 2014

4

Critical assessment of methods of protein structure prediction (CASP)—Round 6

John Moult, Krzysztof Fidelis, Burkhard Rost, Tim Hubbard, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 66 KB

english, 2005

5

Identification and functional characterization of the bile acid transport proteins in non-mammalian ileum and mammalian liver

Mara Guariento, Domenico Raimondo, Michael Assfalg, Serena Zanzoni, Patrizia Pesente, Laura Ragona, Anna Tramontano, Henriette Molinari

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 513 KB

english, 2008

6

Critical assessment of methods of protein structure prediction—Round VIII

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Burkhard Rost, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 71 KB

english, 2009

7

Critical assessment of methods of protein structure prediction (CASP)—round IX

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 75 KB

english, 2011

8

Conformations of immunoglobulin hypervariable regions

Chothia, Cyrus, Lesk, Arthur M., Tramontano, Anna, Levitt, Michael, Smith-Gill, Sandra J., Air, Gillian, Sheriff, Steven, Padlan, Eduardo A., Davies, David, Tulip, William R.

Journal:

Year:

1989

File:

PDF, 595 KB

1989

9

Framework residue 71 is a major determinant of the position and conformation of the second hypervariable region in the VH domains of immunoglobulins

Anna Tramontano, Cyrus Chothia, Arthur M. Lesk

Journal:

Journal of Molecular Biology

Year:

1990

Language:

english

File:

PDF, 781 KB

english, 1990

10

Digestive peptidase evolution in holometabolous insects led to a divergent group of enzymes in Lepidoptera

Dias, Renata O., Via, Allegra, Brandão, Marcelo M., Tramontano, Anna, Silva-Filho, Marcio C.

Journal:

Insect Biochemistry and Molecular Biology

Year:

2015

Language:

english

File:

PDF, 3.69 MB

english, 2015

11

Critical assessment of methods of protein structure prediction (CASP) - progress and new directions in Round XI

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 646 KB

english, 2016

12

Critical Assessment of Methods of Protein Structure Prediction (CASP) - Round XII

Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

13

Expression of Calmodulin and Myosin Light Chain Kinase during Larval Settlement of the Barnacle Balanus amphitrite

Chen, Zhang-Fan, Wang, Hao, Matsumura, Kiyotaka, Qian, Pei-Yuan, Tramontano, Anna

Journal:

Year:

2012

Language:

english

File:

PDF, 626 KB

english, 2012

14

Prevalence and serological profile of anti-DFS70 positive subjects from a routine ANA cohort

Carbone, Teresa, Pafundi, Vito, Tramontano, Giuseppina, Gilio, Michele, Padula, Maria Carmela, Padula, Angela Anna, D’Angelo, Salvatore

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 1.05 MB

english, 2019

15

GLASS: A tool to visualize protein structure prediction data in three dimensions and evaluate their consistency

Raphael Leplae, Tim Hubbard, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 1.07 MB

english, 1998

16

A model for the hepatitis C virus envelope glycoprotein E2

Asutosh T. Yagnik, Armin Lahm, Annalisa Meola, Rosa Maria Roccasecca, Bruno B. Ercole, Alfredo Nicosia, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 671 KB

english, 2000

17

Eine bessere Zukunft für Proteindesigner

Anna Tramontano

Journal:

Angewandte Chemie

Year:

2004

Language:

german

File:

PDF, 76 KB

german, 2004

18

A Brighter Future for Protein Design

Anna Tramontano

Journal:

Angewandte Chemie International Edition

Year:

2004

Language:

english

File:

PDF, 75 KB

english, 2004

19

Exploiting evolutionary relationships for predicting protein structures

Anna Tramontano, Veronica Morea

Journal:

Biotechnology and Bioengineering

Year:

2003

Language:

english

File:

PDF, 416 KB

english, 2003

20

Comparative modelling techniques: where are we?

Anna Tramontano

Journal:

Comparative and Functional Genomics

Year:

2003

Language:

english

File:

PDF, 79 KB

english, 2003

21

A Brighter Future for Protein Design

Anna Tramontano

Journal:

Year:

2004

File:

PDF, 48 KB

2004

22

Novel Cinnamyl Hydroxyamides and 2-Aminoanilides as Histone Deacetylase Inhibitors: Apoptotic Induction and Cytodifferentiation Activity

Dr. Sergio Valente, Dr. Maria Tardugno, Dr. Mariarosaria Conte, Dr. Roberto Cirilli, Dr. Andrea Perrone, Dr. Rino Ragno, Dr. Silvia Simeoni, Prof. Anna Tramontano, Prof. Silvio Massa, Dr. Angela Nebbi

Journal:

Year:

2011

Language:

english

File:

PDF, 986 KB

english, 2011

23

The making of the minibody: An engineered β-protein for the display of conformationally constrained peptides

Anna Tramontano, Elisabetta Bianchi, Sara Venturini, Franck Martin, Antonelo Pessi, Maurizio Sallozzo

Journal:

Journal of Molecular Recognition

Year:

1994

Language:

english

File:

PDF, 1.41 MB

english, 1994

24

Nuclear incorporation of [adenine 14NAD is altered by compounds which affect poly(ADP-ribose) formation

William A. Tramontano, Donna A. Phillips, Christine A. Carman, Anna Maria Massaro

Journal:

Year:

1990

Language:

english

File:

PDF, 294 KB

english, 1990

25

Identification of biologically active peptides using random libraries displayed on phage

Riccardo Cortese, Paolo Monaci, Alfredo Nicosia, Alessandra Luzzago, Franco Felici, Giovanni Galfré, Antonello Pessi, Anna Tramontano, Maurizio Sollazzo

Journal:

Current Opinion in Biotechnology

Year:

1995

Language:

english

File:

PDF, 865 KB

english, 1995

26

Integral and differential form of the protein folding problem

Anna Tramontano

Journal:

Physics of Life Reviews

Year:

2004

Language:

english

File:

PDF, 737 KB

english, 2004

27

Horizontal and vertical growth ofS. cerevisiaemetabolic network

Luigi Grassi, Anna Tramontano

Journal:

BMC Evolutionary Biology

Year:

2011

Language:

english

File:

PDF, 274 KB

english, 2011

28

Molecular evolution of a gene cluster of serine proteases expressed in theAnopheles gambiaefemale reproductive tract

Emiliano Mancini, Federica Tammaro, Francesco Baldini, Allegra Via, Domenico Raimondo, Phillip George, Paolo Audisio, Igor V Sharakhov, Anna Tramontano, Flaminia Catteruccia, Alessandra della Torre

Journal:

BMC Evolutionary Biology

Year:

2011

Language:

english

File:

PDF, 2.56 MB

english, 2011

29

Cloning, characterization, and modeling of a monoclonal anti-human transferrin antibody that competes with the transferrin receptor

Maurizio Orlandini, Annalisa Santucci, Anna Tramontano, Paolo Neri, Salvatore Oliviero

Journal:

Protein Science

Year:

1994

Language:

english

File:

PDF, 4.08 MB

english, 1994

30

Probing the tertiary structure of proteins by limited proteolysis and mass spectrometry: The case of minibody

Francesca Zappacosta, Antonello Pessi, Elisabetta Bianchi, Sara Venturini, Maurizio Sollazzo, Anna Tramontano, Gennaro Marino, Piero Pucci

Journal:

Protein Science

Year:

1996

Language:

english

File:

PDF, 4.30 MB

english, 1996

31

Surface topology of Minibody by selective chemical modifications and mass spectrometry

Francesca Zappacosta, Paolo Ingallinella, Andrea Scaloni, Antonello Pessi, Elisabetta Bianchi, Maurizio Sollazzo, Anna Tramontano, Gennaro Marino, Piero Pucci

Journal:

Protein Science

Year:

1997

Language:

english

File:

PDF, 2.47 MB

english, 1997

32

Analysis and assessment of comparative modeling predictions in CASP4

Anna Tramontano, Raphael Leplae, Veronica Morea

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 2.17 MB

english, 2001

33

Classification of proteins based on the properties of the ligand-binding site: The case of adenine-binding proteins

Valentina Cappello, Anna Tramontano, Uwe Koch

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2002

Language:

english

File:

PDF, 338 KB

english, 2002

34

Assessment of homology-based predictions in CASP5

Anna Tramontano, Veronica Morea

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 999 KB

english, 2003

35

Assessment of homology-based predictions in CASP5

Anna Tramontano, Veronica Morea

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 34 KB

english, 2004

36

Relationship between multiple sequence alignments and quality of protein comparative models

Domenico Cozzetto, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 252 KB

english, 2005

37

The prediction of protein function at CASP6

Simonetta Soro, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 202 KB

english, 2005

38

Automatic procedure for using models of proteins in molecular replacement

Domenico Raimondo, Alejandro Giorgetti, Alejandro Giorgetti, Stefania Bosi, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 238 KB

english, 2007

39

Assessment of predictions in the model quality assessment category

Domenico Cozzetto, Andriy Kryshtafovych, Michele Ceriani, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

40

A model of the complex between the PfEMP1 malaria protein and the human ICAM-1 receptor

Claudia Bertonati, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.60 MB

english, 2007

41

Critical assessment of methods of protein structure prediction—Round VII

John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Burkhard Rost, Tim Hubbard, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 114 KB

english, 2007

42

Evaluation of CASP8 model quality predictions

Domenico Cozzetto, Andriy Kryshtafovych, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 332 KB

english, 2009

43

Evaluation of template-based models in CASP8 with standard measures

Domenico Cozzetto, Andriy Kryshtafovych, Krzysztof Fidelis, John Moult, Burkhard Rost, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 129 KB

english, 2009

44

In memoriam

David Abia, Ugo Bastolla, Pablo Chacón, Carme Fábrega, Federico Gago, Antonio Morreale, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 175 KB

english, 2010

45

Structural repertoire of immunoglobulin λ light chains

Anna Chailyan, Paolo Marcatili, Davide Cirillo, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 409 KB

english, 2011

46

Evaluation of disorder predictions in CASP9

Bohdan Monastyrskyy, Krzysztof Fidelis, John Moult, Anna Tramontano, Andriy Kryshtafovych

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.71 MB

english, 2011

47

Evaluation of residue–residue contact predictions in CASP9

Bohdan Monastyrskyy, Krzysztof Fidelis, Anna Tramontano, Andriy Kryshtafovych

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 546 KB

english, 2011

48

Evaluation of model quality predictions in CASP9

Andriy Kryshtafovych, Krzysztof Fidelis, Anna Tramontano

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.15 MB

english, 2011

49

Structural determinants of the conformations of medium-sized loops in proteins

Anna Tramontano, Cyrus Chothia, Arthur M. Lesk

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1989

Language:

english

File:

PDF, 1.14 MB

english, 1989

50

Common features of the conformations of antigen-binding loops in immunoglobulins and application to modeling loop conformations

Dr. Anna Tramontano, Arthur M. Lesk

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1992

Language:

english

File:

PDF, 1005 KB

english, 1992